Labsco
openai logo

rhea-skill

✓ Official★ 4,000

by openai · part of openai/plugins

Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. Use when a user wants concise Rhea summaries

🔥🔥🔥✓ VerifiedFreeQuick setup
#git
🧩 One of 7 skills in the openai/plugins package — works on its own, and pairs well with its siblings.

This is the playbook your agent receives when the skill activates — you don't need to read it to use the skill, but it's here to audit before installing.

name: rhea-skill description: Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. Use when a user wants concise Rhea summaries

Operating rules

  • Use scripts/rest_request.py for all Rhea calls.
  • Use base_url=https://www.rhea-db.org.
  • Start with the rhea search endpoint plus format=json.
  • Keep queries narrow by reaction ID, compound name, EC number, or free-text reaction term.
  • Re-run requests in long conversations instead of relying on older tool output.

Execution behavior

  • Return concise markdown summaries from the script JSON by default.
  • Return raw JSON only if the user explicitly asks for machine-readable output.
  • Prefer these patterns: reaction search by query, targeted ID search via query=RHEA:<id>, and small result windows.

Input

  • Read one JSON object from stdin.
  • Required fields: base_url, path
  • Optional fields: method, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path
  • Common Rhea patterns:
    • {"base_url":"https://www.rhea-db.org","path":"rhea","params":{"query":"caffeine","format":"json"},"record_path":"results","max_items":10}
    • {"base_url":"https://www.rhea-db.org","path":"rhea","params":{"query":"RHEA:47148","format":"json"},"record_path":"results","max_items":5}

Output

  • Success returns ok, source, path, method, status_code, warnings, and either compact records or a compact summary.
  • Use raw_output_path when save_raw=true.
  • Failure returns ok=false with error.code and error.message.

Execution

echo '{"base_url":"https://www.rhea-db.org","path":"rhea","params":{"query":"caffeine","format":"json"},"record_path":"results","max_items":10}' | python scripts/rest_request.py

References

  • No additional runtime references are required; keep the import package limited to this file and scripts/rest_request.py.